EMBOSS explorer

cons

Creates a consensus from multiple alignments (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:

Scoring matrix. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
Additional section
Plurality check value (default is Half the total sequence weighting)
Required number of identities at a position
Define a threshold above which the consensus is given in uppercase
Output section
Output sequence format
Name of the consensus sequence
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.