EMBOSS explorer

fdnapars

DNA parsimony algorithm (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Select an input file::
Weights file:
Additional section
Number of trees to save
More thorough search?
Rearrange on just one best tree?
Use transversion parsimony?
Number of times to randomise
Random number seed between 1 and 32767 (must be odd)
Species number to use as outgroup
Use threshold parsimony?
Threshold value
Output section
Write out trees to tree file?
Print data at start of run?
Print indications of progress of run?
Print out steps in each site?
Print sequences at all nodes of tree?
Print out tree?
Use dot differencing to display results?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.