EMBOSS explorer

fpenny

Penny algorithm, branch-and-bound (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section
Select an input file::
Weights file:
Ancestral states file:
Mixture file:
Additional section
Choose the method to use
Species number to use as outgroup
How many groups of trees
How often to report, in trees
Branch and bound is simple?
Threshold value
Output section
Write out trees to tree file?
Print data at start of run?
Print indications of progress of run?
Print out tree?
Print out steps in each site?
Print states at all nodes of tree?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.