EMBOSS explorer

infoalign

Information on a multiple sequence alignment (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:

Similarity scoring Matrix file. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
The number or the name of the reference sequence
Advanced section
Plurality check % for consensus
Required % of identities at a position fro consensus
Output section
Format output as an HTML table?
Display column headings?
Display the USA of the sequence?
Display 'name' column?
Display 'seqlength' column?
Display 'alignlength' column?
Display number of gaps?
Display number of gap positions?
Display number of identical positions?
Display number of similar positions?
Display number of different positions?
Display % number of changed positions?
Display 'weight' column?
Display 'description' column?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.