EMBOSS explorer

matgen3d

Generate a 3D-1D scoring matrix from CCF files. (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section
This option specifies the amino acid residue positions to use in calculating the substitution data.
This option specifies whether to use all ligands or a specific set of ligands present in a CON file when calculating the substitution data.
Name of DCF file (domain classification file (input):
Name of CON file (contacts file) (input):
Name of ligand list file (input):

inappropriate datatype directory

inappropriate datatype directory

Required section
This option specifies the environment definition. See matgen3d documentation for description of definitions.
Additional section
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.