EMBOSS explorer

prophecy

Creates matrices/profiles from multiple alignments (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Select type

Scoring matrix. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
Required section
Enter a name for the profile
Profile type specific options
Enter threshold reporting percentage
Gap options
Gap opening penalty
Gap extension penalty
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.